{
  "_id": "6a192ba9acfb0bcc41dce10e",
  "Package": "tiledbsoma",
  "Type": "Package",
  "Title": "'TileDB' Stack of Matrices, Annotated ('SOMA')",
  "Description": "Interface for working with 'TileDB'-based Stack of\nMatrices, Annotated ('SOMA'): an open data model for\nrepresenting annotated matrices, like those commonly used for\nsingle cell data analysis. It is documented at\n<https://github.com/single-cell-data>; a formal specification\navailable is at\n<https://github.com/single-cell-data/SOMA/blob/main/abstract_specification.md>.",
  "Version": "2.3.0",
  "Authors@R": "c(\nperson(given = \"Paul\", family = \"Hoffman\",\nrole = c(\"cre\", \"aut\"), email = \"tiledb-r@tiledb.com\",\ncomment = c(ORCID = \"0000-0002-7693-8957\")),\nperson(given = \"Aaron\", family = \"Wolen\",\nrole = \"aut\", email = \"aaron@tiledb.com\",\ncomment = c(ORCID = \"0000-0003-2542-2202\")),\nperson(given = \"Julia\", family = \"Dark\",\nrole = \"ctb\", email = \"julia@tiledb.com\"),\nperson(given = \"John\", family = \"Kerl\",\nrole = \"ctb\", email = \"john.kerl@tiledb.com\"),\nperson(given = \"TileDB, Inc.\",\nrole = c(\"cph\", \"fnd\"))\n)",
  "URL": "https://single-cell-data.github.io/TileDB-SOMA/,\nhttps://github.com/single-cell-data/TileDB-SOMA",
  "BugReports": "https://github.com/single-cell-data/TileDB-SOMA/issues",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Additional_repositories": "https://tiledb-inc.r-universe.dev,\nhttps://bnprks.r-universe.dev/",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "2",
  "OS_type": "unix",
  "SystemRequirements": "C++20, cmake, git",
  "Config/pak/sysreqs": "cmake git make libuv1-dev libzstd-dev libssl-dev",
  "Repository": "https://tiledb-inc.r-universe.dev",
  "Date/Publication": "2026-01-27 15:20:09 UTC",
  "RemoteUrl": "https://github.com/single-cell-data/TileDB-SOMA",
  "RemoteRef": "2.3.0",
  "RemoteSha": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
  "RemoteSubdir": "apis/r",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-27 06:24:03 UTC",
    "User": "root"
  },
  "Author": "Paul Hoffman [cre, aut] (ORCID:\n<https://orcid.org/0000-0002-7693-8957>),\nAaron Wolen [aut] (ORCID: <https://orcid.org/0000-0003-2542-2202>),\nJulia Dark [ctb],\nJohn Kerl [ctb],\nTileDB, Inc. [cph, fnd]",
  "Maintainer": "Paul Hoffman <tiledb-r@tiledb.com>",
  "MD5sum": "d7d9161b846ad8738c2f9198138209b0",
  "_user": "tiledb-inc",
  "_type": "src",
  "_file": "tiledbsoma_2.3.0.tar.gz",
  "_fileid": "b42202c8d82b5cc6e7fdd1a05f4cb623af6fd00f7e13b41b53141ddf74153d43",
  "_filesize": 2468993,
  "_sha256": "b42202c8d82b5cc6e7fdd1a05f4cb623af6fd00f7e13b41b53141ddf74153d43",
  "_created": "2026-05-27T06:24:03.000Z",
  "_published": "2026-05-29T06:01:13.700Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78445804347,
      "time": 423,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78445804767,
      "time": 1028,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7233735084"
    },
    {
      "job": 78445804326,
      "time": 451,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78445804759,
      "time": 947,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7233714076"
    },
    {
      "job": 78445804985,
      "time": 422,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7233577917"
    },
    {
      "job": 78445804863,
      "time": 945,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7233713627"
    },
    {
      "job": 78445804840,
      "time": 334,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7233553618"
    },
    {
      "job": 78445804552,
      "time": 782,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7233671869"
    },
    {
      "job": 78445804452,
      "time": 1463,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7233460949"
    },
    {
      "job": 78445804236,
      "time": 175,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "FAIL",
      "artifact": ""
    },
    {
      "job": 78445804795,
      "time": 224,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": ""
    },
    {
      "job": 78445804698,
      "time": 173,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": ""
    },
    {
      "job": 78445804752,
      "time": 172,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": ""
    }
  ],
  "_buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/single-cell-data/TileDB-SOMA",
  "_commit": {
    "id": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
    "author": "github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "[r] Skip tests using deprecated code in envs with lifecycle < 1.0.5 (#4395) (#4396)\n\n* update tests to skip lifecycle condition warnings\n\nlifecycle 1.0.4 emits a lifecycle_stage condition even when lifecycle_verbosity = \"quiet\",\nwhich causes expect_no_condition() to fail\n\n* Remove duplicate lifecycle dependency\n\n(cherry picked from commit 6173f240e59a446538f07e007d4789e1f0057b9b)\n\nCo-authored-by: Aaron Wolen <aaron@wolen.com>",
    "time": 1769527209
  },
  "_maintainer": {
    "name": "Paul Hoffman",
    "email": "tiledb-r@tiledb.com",
    "orcid": "0000-0002-7693-8957"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "nanoarrow",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppInt64",
      "role": "LinkingTo"
    },
    {
      "package": "arrow",
      "version": ">= 19.0.1",
      "role": "Imports"
    },
    {
      "package": "bit64",
      "version": ">= 4.6.0.1",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "version": ">= 1.6.4",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "nanoarrow",
      "role": "Imports"
    },
    {
      "package": "R6",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "version": ">= 1.1.5",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tiledb",
      "version": ">= 0.34.0",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "BPCells",
      "role": "Suggests"
    },
    {
      "package": "datasets",
      "role": "Suggests"
    },
    {
      "package": "iterators",
      "role": "Suggests"
    },
    {
      "package": "itertools",
      "role": "Suggests"
    },
    {
      "package": "jsonlite",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pbmc3k",
      "role": "Suggests"
    },
    {
      "package": "pbmc3k.tiledb",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "S4Vectors",
      "role": "Suggests"
    },
    {
      "package": "SeuratObject",
      "version": ">= 4.1.0",
      "role": "Suggests"
    },
    {
      "package": "SingleCellExperiment",
      "version": ">= 1.20.0",
      "role": "Suggests"
    },
    {
      "package": "SummarizedExperiment",
      "version": ">= 1.28.0",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "withr",
      "role": "Suggests"
    }
  ],
  "_owner": "single-cell-data",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-22",
      "n": 14
    },
    {
      "week": "2025-23",
      "n": 9
    },
    {
      "week": "2025-24",
      "n": 8
    },
    {
      "week": "2025-25",
      "n": 8
    },
    {
      "week": "2025-26",
      "n": 14
    },
    {
      "week": "2025-27",
      "n": 9
    },
    {
      "week": "2025-28",
      "n": 3
    },
    {
      "week": "2025-29",
      "n": 2
    },
    {
      "week": "2025-30",
      "n": 9
    },
    {
      "week": "2025-31",
      "n": 5
    },
    {
      "week": "2025-32",
      "n": 4
    },
    {
      "week": "2025-33",
      "n": 2
    },
    {
      "week": "2025-34",
      "n": 6
    },
    {
      "week": "2025-35",
      "n": 6
    },
    {
      "week": "2025-36",
      "n": 6
    },
    {
      "week": "2025-37",
      "n": 6
    },
    {
      "week": "2025-38",
      "n": 4
    },
    {
      "week": "2025-39",
      "n": 10
    },
    {
      "week": "2025-40",
      "n": 5
    },
    {
      "week": "2025-41",
      "n": 13
    },
    {
      "week": "2025-42",
      "n": 9
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-47",
      "n": 1
    },
    {
      "week": "2025-49",
      "n": 12
    },
    {
      "week": "2025-50",
      "n": 5
    },
    {
      "week": "2025-51",
      "n": 1
    },
    {
      "week": "2025-52",
      "n": 2
    },
    {
      "week": "2026-03",
      "n": 5
    },
    {
      "week": "2026-04",
      "n": 6
    },
    {
      "week": "2026-05",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "1.17.1",
      "date": "2025-07-28"
    },
    {
      "name": "2.0.0rc0",
      "date": "2025-09-26"
    },
    {
      "name": "2.0.0",
      "date": "2025-10-06"
    },
    {
      "name": "2.0.0rc1",
      "date": "2025-10-06"
    },
    {
      "name": "2.1.0rc0",
      "date": "2025-10-15"
    },
    {
      "name": "2.1.0",
      "date": "2025-10-17"
    },
    {
      "name": "2.1.1",
      "date": "2025-11-13"
    },
    {
      "name": "2.1.1rc0",
      "date": "2025-11-13"
    },
    {
      "name": "2.1.2",
      "date": "2025-11-21"
    },
    {
      "name": "2.1.2rc0",
      "date": "2025-11-21"
    },
    {
      "name": "2.2.0",
      "date": "2025-12-11"
    },
    {
      "name": "2.2.0rc0",
      "date": "2025-12-11"
    },
    {
      "name": "2.3.0rc0",
      "date": "2026-01-26"
    },
    {
      "name": "2.3.0",
      "date": "2026-01-27"
    }
  ],
  "_topics": [
    "single-cell",
    "single-cell-genomics",
    "tiledb",
    "tiledb-api",
    "tiledb-soma",
    "cpp"
  ],
  "_stars": 126,
  "_contributors": [
    {
      "user": "johnkerl",
      "count": 1174,
      "uuid": 2008794
    },
    {
      "user": "jp-dark",
      "count": 214,
      "uuid": 24235303
    },
    {
      "user": "eddelbuettel",
      "count": 162,
      "uuid": 673121
    },
    {
      "user": "aaronwolen",
      "count": 131,
      "uuid": 1067915
    },
    {
      "user": "mojaveazure",
      "count": 106,
      "uuid": 11035068
    },
    {
      "user": "thetorpedodog",
      "count": 103,
      "uuid": 6622003
    },
    {
      "user": "ryan-williams",
      "count": 84,
      "uuid": 465045
    },
    {
      "user": "xanthosxanthopoulos",
      "count": 69,
      "uuid": 38084549
    },
    {
      "user": "gspowley",
      "count": 32,
      "uuid": 10476709
    },
    {
      "user": "mlin",
      "count": 27,
      "uuid": 356550
    },
    {
      "user": "ebezzi",
      "count": 22,
      "uuid": 7020189
    },
    {
      "user": "gsakkis",
      "count": 19,
      "uuid": 291289
    },
    {
      "user": "shelnutt2",
      "count": 16,
      "uuid": 302404
    },
    {
      "user": "beroy",
      "count": 11,
      "uuid": 3478791
    },
    {
      "user": "ihnorton",
      "count": 11,
      "uuid": 327706
    },
    {
      "user": "ktsitsi",
      "count": 10,
      "uuid": 11460483
    },
    {
      "user": "jdblischak",
      "count": 10,
      "uuid": 1608317
    },
    {
      "user": "atolopko-czi",
      "count": 9,
      "uuid": 29237884
    },
    {
      "user": "maniarathi",
      "count": 5,
      "uuid": 4887796
    },
    {
      "user": "teo-tsirpanis",
      "count": 5,
      "uuid": 12659251
    },
    {
      "user": "pablo-gar",
      "count": 4,
      "uuid": 29237819
    },
    {
      "user": "bekadavis9",
      "count": 2,
      "uuid": 31743465
    },
    {
      "user": "spencerseale",
      "count": 2,
      "uuid": 34170828
    },
    {
      "user": "kounelisagis",
      "count": 1,
      "uuid": 36283973
    },
    {
      "user": "ap--",
      "count": 1,
      "uuid": 1463443
    },
    {
      "user": "charlesbordet",
      "count": 1,
      "uuid": 7228536
    },
    {
      "user": "ivirshup",
      "count": 1,
      "uuid": 8238804
    },
    {
      "user": "jeroen",
      "count": 1,
      "uuid": 216319
    },
    {
      "user": "davisp",
      "count": 1,
      "uuid": 19929
    }
  ],
  "_userbio": {
    "uuid": 26827816,
    "type": "organization",
    "name": "TileDB, Inc."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tiledbsoma"
  },
  "_devurl": "https://github.com/single-cell-data/tiledb-soma",
  "_pkgdown": "https://single-cell-data.github.io/TileDB-SOMA/",
  "_searchresults": 58,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/tiledbsoma.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "BlockwiseReadIterBase",
    "BlockwiseSparseReadIter",
    "BlockwiseTableReadIter",
    "ConfigList",
    "CoordsStrider",
    "EphemeralCollection",
    "EphemeralCollectionBase",
    "EphemeralExperiment",
    "EphemeralMeasurement",
    "extract_dataset",
    "get_default_context",
    "IntIndexer",
    "list_datasets",
    "load_dataset",
    "MappingBase",
    "matrixZeroBasedView",
    "PlatformConfig",
    "ReadIter",
    "ScalarMap",
    "set_default_context",
    "set_log_level",
    "show_package_versions",
    "soma_context",
    "SOMAArrayBase",
    "SOMAAxisIndexer",
    "SOMAAxisQuery",
    "SOMAAxisQueryResult",
    "SOMACollection",
    "SOMACollectionBase",
    "SOMACollectionCreate",
    "SOMACollectionOpen",
    "SOMAContext",
    "SOMAContextBase",
    "SOMADataFrame",
    "SOMADataFrameCreate",
    "SOMADataFrameOpen",
    "SOMADenseNDArray",
    "SOMADenseNDArrayCreate",
    "SOMADenseNDArrayOpen",
    "SOMAExperiment",
    "SOMAExperimentAxisQuery",
    "SOMAExperimentCreate",
    "SOMAExperimentOpen",
    "SOMAMeasurement",
    "SOMAMeasurementCreate",
    "SOMAMeasurementOpen",
    "SOMANDArrayBase",
    "SOMAObject",
    "SOMAOpen",
    "SOMASparseNDArray",
    "SOMASparseNDArrayBlockwiseRead",
    "SOMASparseNDArrayCreate",
    "SOMASparseNDArrayOpen",
    "SOMASparseNDArrayRead",
    "SOMASparseNDArrayReadBase",
    "SOMATileDBContext",
    "SparseReadIter",
    "TableReadIter",
    "TileDBCreateOptions",
    "tiledbsoma_stats_disable",
    "tiledbsoma_stats_dump",
    "tiledbsoma_stats_enable",
    "tiledbsoma_stats_reset",
    "tiledbsoma_stats_show",
    "write_soma"
  ],
  "_help": [
    {
      "page": "ConfigList",
      "title": "A Configuration List",
      "topics": [
        "ConfigList"
      ]
    },
    {
      "page": "example-datasets",
      "title": "SOMA Example Datasets",
      "topics": [
        "example-datasets",
        "extract_dataset",
        "list_datasets",
        "load_dataset"
      ]
    },
    {
      "page": "get_default_context",
      "title": "Get the Default SOMA Context",
      "topics": [
        "get_default_context"
      ]
    },
    {
      "page": "IntIndexer",
      "title": "The SOMA Re-Indexer",
      "topics": [
        "IntIndexer"
      ]
    },
    {
      "page": "matrixZeroBasedView",
      "title": "Zero-based Wrapper for Sparse Matrices",
      "topics": [
        "matrixZeroBasedView"
      ]
    },
    {
      "page": "PlatformConfig",
      "title": "Platform Configuration",
      "topics": [
        "PlatformConfig"
      ]
    },
    {
      "page": "set_default_context",
      "title": "Set the Default Global Context",
      "topics": [
        "set_default_context"
      ]
    },
    {
      "page": "set_log_level",
      "title": "Set TileDB-SOMA Logging Level",
      "topics": [
        "set_log_level"
      ]
    },
    {
      "page": "show_package_versions",
      "title": "Display package versions",
      "topics": [
        "show_package_versions"
      ]
    },
    {
      "page": "SOMAAxisQuery",
      "title": "SOMA Axis Query",
      "topics": [
        "SOMAAxisQuery"
      ]
    },
    {
      "page": "SOMAAxisQueryResult",
      "title": "'SOMAExperiment' Axis Query Result",
      "topics": [
        "SOMAAxisQueryResult"
      ]
    },
    {
      "page": "SOMACollection",
      "title": "SOMA Collection",
      "topics": [
        "SOMACollection"
      ]
    },
    {
      "page": "SOMACollectionCreate",
      "title": "Create a SOMA Collection",
      "topics": [
        "SOMACollectionCreate"
      ]
    },
    {
      "page": "SOMACollectionOpen",
      "title": "Open a SOMA Collection",
      "topics": [
        "SOMACollectionOpen"
      ]
    },
    {
      "page": "SOMAContext",
      "title": "SOMA Context",
      "topics": [
        "SOMAContext"
      ]
    },
    {
      "page": "SOMADataFrame",
      "title": "SOMADataFrame",
      "topics": [
        "SOMADataFrame"
      ]
    },
    {
      "page": "SOMADataFrameCreate",
      "title": "Create a SOMA Data Frame",
      "topics": [
        "SOMADataFrameCreate"
      ]
    },
    {
      "page": "SOMADataFrameOpen",
      "title": "Open a SOMA Data Frame",
      "topics": [
        "SOMADataFrameOpen"
      ]
    },
    {
      "page": "SOMADenseNDArray",
      "title": "SOMA Dense Nd-Array",
      "topics": [
        "SOMADenseNDArray"
      ]
    },
    {
      "page": "SOMADenseNDArrayCreate",
      "title": "Create a SOMA Dense ND Array",
      "topics": [
        "SOMADenseNDArrayCreate"
      ]
    },
    {
      "page": "SOMADenseNDArrayOpen",
      "title": "Open a SOMA Dense Nd Array",
      "topics": [
        "SOMADenseNDArrayOpen"
      ]
    },
    {
      "page": "SOMAExperiment",
      "title": "SOMA Experiment",
      "topics": [
        "SOMAExperiment"
      ]
    },
    {
      "page": "SOMAExperimentAxisQuery",
      "title": "'SOMAExperiment' Axis Query",
      "topics": [
        "SOMAExperimentAxisQuery"
      ]
    },
    {
      "page": "SOMAExperimentCreate",
      "title": "Create a SOMA Experiment",
      "topics": [
        "SOMAExperimentCreate"
      ]
    },
    {
      "page": "SOMAExperimentOpen",
      "title": "Open SOMA Experiment",
      "topics": [
        "SOMAExperimentOpen"
      ]
    },
    {
      "page": "SOMAMeasurement",
      "title": "SOMA Measurement",
      "topics": [
        "SOMAMeasurement"
      ]
    },
    {
      "page": "SOMAMeasurementCreate",
      "title": "Create a SOMA Measurement",
      "topics": [
        "SOMAMeasurementCreate"
      ]
    },
    {
      "page": "SOMAMeasurementOpen",
      "title": "Open SOMA Measurement",
      "topics": [
        "SOMAMeasurementOpen"
      ]
    },
    {
      "page": "SOMAOpen",
      "title": "Open a SOMA Object",
      "topics": [
        "SOMAOpen"
      ]
    },
    {
      "page": "SOMASparseNDArray",
      "title": "SOMA Sparse Nd-Array",
      "topics": [
        "SOMASparseNDArray"
      ]
    },
    {
      "page": "SOMASparseNDArrayCreate",
      "title": "Create a SOMA Sparse ND Array",
      "topics": [
        "SOMASparseNDArrayCreate"
      ]
    },
    {
      "page": "SOMASparseNDArrayOpen",
      "title": "Open a SOMA Sparse ND Array",
      "topics": [
        "SOMASparseNDArrayOpen"
      ]
    },
    {
      "page": "SOMATileDBContext",
      "title": "SOMA TileDB Context",
      "topics": [
        "SOMATileDBContext"
      ]
    },
    {
      "page": "SparseReadIter",
      "title": "SOMA Read Iterator Over Sparse Matrices",
      "topics": [
        "SparseReadIter"
      ]
    },
    {
      "page": "TableReadIter",
      "title": "SOMA Read Iterator Over Arrow Tables",
      "topics": [
        "TableReadIter"
      ]
    },
    {
      "page": "tiledbsoma_stats",
      "title": "TileDB SOMA Statistics",
      "topics": [
        "tiledbsoma_stats",
        "tiledbsoma_stats_disable",
        "tiledbsoma_stats_dump",
        "tiledbsoma_stats_enable",
        "tiledbsoma_stats_reset",
        "tiledbsoma_stats_show"
      ]
    },
    {
      "page": "write_soma",
      "title": "Write a SOMA Object from an R Object",
      "topics": [
        "write_soma"
      ]
    },
    {
      "page": "write_soma.Seurat",
      "title": "Write a 'Seurat' object to a SOMA",
      "topics": [
        "write_soma.Seurat"
      ]
    },
    {
      "page": "write_soma.SingleCellExperiment",
      "title": "Write a 'SingleCellExperiment' object to a SOMA",
      "topics": [
        "write_soma.SingleCellExperiment"
      ]
    },
    {
      "page": "write_soma.SummarizedExperiment",
      "title": "Write a 'SummarizedExperiment' object to a SOMA",
      "topics": [
        "write_soma.SummarizedExperiment"
      ]
    }
  ],
  "_readme": "https://github.com/single-cell-data/TileDB-SOMA/raw/2.3.0/apis/r/README.md",
  "_rundeps": [
    "arrow",
    "assertthat",
    "bit",
    "bit64",
    "cli",
    "cpp11",
    "data.table",
    "fs",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "nanoarrow",
    "nanotime",
    "purrr",
    "R6",
    "Rcpp",
    "RcppCCTZ",
    "RcppDate",
    "RcppInt64",
    "RcppSpdlog",
    "rlang",
    "spdl",
    "tidyselect",
    "tiledb",
    "vctrs",
    "withr",
    "zoo"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "soma-experiment-queries.Rmd",
      "filename": "soma-experiment-queries.html",
      "title": "Querying a SOMA experiment",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Example data",
        "Querying basics",
        "Adding filters",
        "Export to an annotated re-indexed sparse matrix",
        "Export to Seurat"
      ],
      "created": "2023-05-05 13:15:23",
      "modified": "2025-05-13 17:34:14",
      "commits": 7
    },
    {
      "source": "soma-reading.Rmd",
      "filename": "soma-reading.html",
      "title": "Reading from SOMA objects",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Example data",
        "SOMA DataFrame",
        "Slicing",
        "Selecting columns",
        "Filtering",
        "SOMA SparseNDArray"
      ],
      "created": "2023-05-05 13:15:23",
      "modified": "2025-05-13 17:34:14",
      "commits": 5
    },
    {
      "source": "soma-objects.Rmd",
      "filename": "soma-objects.html",
      "title": "SOMA objects overview",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Example data",
        "SOMAExperiment",
        "SOMADataFrame",
        "SOMACollection",
        "SOMAMeasurement",
        "SOMASparseNDArray"
      ],
      "created": "2023-05-05 13:15:23",
      "modified": "2025-05-13 17:34:14",
      "commits": 7
    },
    {
      "source": "soma-shapes.Rmd",
      "filename": "soma-shapes.html",
      "title": "SOMA shapes",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Example data",
        "Advanced usage: dataframes with non-standard index columns",
        "Advanced usage: using resize at the dataframe/array level"
      ],
      "created": "2024-12-04 19:45:34",
      "modified": "2025-05-13 17:34:14",
      "commits": 2
    },
    {
      "source": "UsingPlatformConfig.Rmd",
      "filename": "UsingPlatformConfig.html",
      "title": "Using PlatformConfig",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Advanced schema configuration"
      ],
      "created": "2023-04-10 16:59:11",
      "modified": "2025-05-13 17:34:14",
      "commits": 2
    }
  ],
  "_score": 9.663139088134082,
  "_indexed": false,
  "_nocasepkg": "tiledbsoma",
  "_universes": [
    "tiledb-inc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.3.0",
      "date": "2026-05-27T06:46:40.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
      "fileid": "9685baad281f933e69b0b584c4fb00ec91a9b44a513f86c4f362e0a83d3377b2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.3.0",
      "date": "2026-05-27T06:45:37.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
      "fileid": "79396f58df69eb5ecab806511dd00de9aeb4b5c60fec0e5ebd70b856d282f64d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.3.0",
      "date": "2026-05-27T06:37:30.000Z",
      "arch": "aarch64",
      "commit": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
      "fileid": "db9a4a86ca72de600ebdf90ac8f1584ca266b718cdcc8ad496459ba142cfaf44",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.3.0",
      "date": "2026-05-27T06:44:09.000Z",
      "arch": "x86_64",
      "commit": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
      "fileid": "49a8b13873460eb27b91c1383beb974f85adfbd6d8a25a1346b6bce5efe35ff2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.3.0",
      "date": "2026-05-27T06:36:27.000Z",
      "arch": "aarch64",
      "commit": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
      "fileid": "dd1afdc9d497f2b808abbc81b76a735357328006eed3510890b330cfe31137fd",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.3.0",
      "date": "2026-05-27T06:41:53.000Z",
      "arch": "x86_64",
      "commit": "aac88138d12a5fb87ed2601500fdab103ba8a8a0",
      "fileid": "5c9fdd647821fff9527bbcff4674ce2ac5dbd091a5044f717561c050c93fcb12",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/tiledb-inc/actions/runs/26494035245"
    }
  ]
}