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TileDB RMariaDB Examples9 months ago
title: "TileDB and (R)MariaDB Examples"css: "water.css" | Introduction | Installation or Using Docker | Launch Container in Background | Access Container Once to Write via TileDB | Examples | Palmer Penguins | Access Container Again to Read via RMariaDB | DBI | S3 | NYC Taxis | Summary
TileDB API Documentation1 years ago
title: "TileDB API Documentation"css: "water.css" | Prelimaries | API Usage | Creating Arrays | Creating Dimensions | Creating the Array Domain | Creating Attributes | Setting Fill Values | Setting a Compressor | Setting Other Filters | Creating the Array Schema | Setting the Tile and Cell Order | Setting the Data Tile Capacity | Allowing Duplicates | Checking Correctness | Setting Filters | Creating a Filter List | Other Filters | Setting the Tile Chunk Size | Setting a Filter List for an Attribute | Setting a Filter List for a Dimension | Setting a Filter List for All Dimensions | Setting a Filter List for Variable-Sized Value Offsets | Setting Coordinate and Offset Filters | Creating the Array | Creating Encrypted Arrays | Writing Arrays | Writing in Dense Subarrays | Basic Writing using Low-Level Code | Writing Sparse Cells | Writing Encrypted Arrays | Fixed-length Attributes | Var-length Attributes | Writing at a Timestamp | Getting the Fragment Info | Reading Arrays | Reading the Array Schema | Inspecting the array schema | Inspecting Domain | Inspecting Dimensions | Inspecting Attributes | Inspecting Filters | Basic Reading | Basic Reading using Low-Level Code | Variable-length Attributes | Getting the Non-empty Domain | Reopening Arrays | Reading Encrypted Arrays | Multi-range Subarrays | Incomplete Queries | Result Estimation | Time Traveling | Embedded SQL | Asynchronous Queries | Configuration | Basic Usage | Save and Load to File | Configuration Iterator | Array Metadata | Writing Array Metadata | Reading Array Metadata | Deleting Array Metadata | Consolidating And Vacuuming | Fragments | Vacuuming | Object Management | Creating TileDB Groups | Getting the Object Type | List the Object Hierarchy | Move / Remove Object | Virtual Filesystem | Writing | Reading | Managing | S3 | Configuring VFS | Using Performance Statistics | Catching Errors
Querying a SOMA experiment1 years ago
Overview | Example data | Querying basics | Adding filters | Export to an annotated re-indexed sparse matrix | Export to Seurat
Reading from SOMA objects1 years ago
Overview | Example data | SOMA DataFrame | Slicing | Selecting columns | Filtering | SOMA SparseNDArray
SOMA objects overview1 years ago
Example data | SOMAExperiment | SOMADataFrame | SOMACollection | SOMAMeasurement | SOMASparseNDArray
SOMA shapes1 years ago
Overview | Example data | Advanced usage: dataframes with non-standard index columns | Advanced usage: using resize at the dataframe/array level
Using PlatformConfig1 years ago
Advanced schema configuration
Introduction to TileDB1 years ago
title: "First Steps with TileDB"css: "water.css" | Getting started | Dense Arrays | Preliminaries | Basic Reading of Dense Arrays | Read 2-D with attribute selection | Sparse Arrays | Basic Reading and Writing of Sparse Arrays | Date(time) Attributes | Additional Information
Testing3 years ago
Summary | Opting in | Debug information | Running tests interactively
Data Ingestion from SQL4 years ago
title: "Date Ingestion from SQL: A Commented Example"date: "2022-01-25"css: "water.css" | Introduction | Load Required Packages | Connect to Database | Fetch Data | Writing Data to TileDB | Reading Data Back In | See Also | Summary
How to release a version4 years ago
How to update documentation4 years ago
Roxygen2 and Pkgdown | _pkgdown.yml | Build steps | Publishing
How to update from API spec4 years ago
How this was built | Prep | Autogen option 1 | Autogen option 2 | Post-processing | Testing
Setup4 years ago
Build and test | From GitHub | Command-line access | Notebooks
Arrays4 years ago
Listing arrays | Showing array information | Reading arrays | Registering / deregistering arrays | Sharing | Reading/writing metadata
Task graphs4 years ago
Delayed functions | Delayed SQL queries | Delayed generic UDFs | Delayed array UDFs | Composing tasks into task graphs | Examining task graphs | Run as-is | Run with verbosity | Compute locally | Compute locally and sequentially | Continue from error
SQL4 years ago
UDFs4 years ago
Generic UDFs | Single-array UDFs | Multi-array UDFs | UDF registration | Register a UDF and read back UDF info | Invoke registered UDF | Unregister UDF
About task graphs4 years ago
Parallelism | Processes | Call flow | Debugging
Logging in4 years ago
Signing up | Username+password login | Token login | Environment variables | Cached login | Showing user profile
Package status4 years ago
Manual and autogen layers | Prioritization for development | Contact
Installation Options4 years ago
title: "Installation Options for the TileDB R Package"date: "2022-01-25"css: "water.css" | Overview | CRAN | Binaries | Source | Conda | Docker | Summary