Package: tiledb 0.30.2

Isaiah Norton

tiledb: Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays

The modern database 'TileDB' introduces a powerful on-disk format for storing and accessing any complex data based on multi-dimensional arrays. It supports dense and sparse arrays, dataframes and key-values stores, cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression, encryption and checksum filters, uses a fully multi-threaded implementation, supports parallel I/O, data versioning ('time travel'), metadata and groups. It is implemented as an embeddable cross-platform C++ library with APIs from several languages, and integrations. This package provides the R support.

Authors:TileDB, Inc. [aut, cph], Dirk Eddelbuettel [aut], Isaiah Norton [cre]

tiledb_0.30.2.tar.gz
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tiledb.pdf |tiledb.html
tiledb/json (API)
NEWS

# Install 'tiledb' in R:
install.packages('tiledb', repos = c('https://tiledb-inc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tiledb-inc/tiledb-r/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

arrayhdfss3storage-managertiledb

317 exports 103 stars 11.73 score 12 dependencies 3 dependents 307 scripts 1.5k downloads

Last updated 10 days agofrom:5cdc9ff405. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 08 2024
R-4.5-win-x86_64OKOct 08 2024
R-4.5-linux-x86_64OKOct 08 2024
R-4.4-win-x86_64OKOct 08 2024
R-4.4-mac-x86_64OKOct 08 2024
R-4.4-mac-aarch64OKOct 08 2024
R-4.3-win-x86_64OKOct 08 2024
R-4.3-mac-x86_64OKOct 08 2024
R-4.3-mac-aarch64OKOct 08 2024

Exports:allows_dupsallows_dups<-array_consolidatearray_vacuumattrsattrs<-capacitycapacity<-cell_ordercell_val_numcell_val_num<-checkcompletedBatchedconfigcreateBatcheddatatypedatetimes_as_int64datetimes_as_int64<-dimensionsdomainextendedextended<-fetchBatchedfilter_listfilter_list<-fromDataFramefromMatrixfromSparseMatrixget_allocation_size_preferenceget_return_as_preferencehas_attributeis.anonymousis.integralis.sparselimitTileDBCoresload_allocation_size_preferenceload_return_as_preferencemax_chunk_sizenamenfiltersparse_query_conditionquery_conditionquery_condition<-query_layoutquery_layout<-query_statisticsquery_statistics<-r_to_tiledb_typeraw_dumpreturn_asreturn_as<-return.arrayreturn.array<-return.data.framereturn.data.frame<-return.matrixreturn.matrix<-save_allocation_size_preferencesave_return_as_preferenceschemaschema_checkselected_pointsselected_points<-selected_rangesselected_ranges<-set_allocation_size_preferenceset_max_chunk_sizeset_return_as_preferenceshowstatusBatchedstrings_as_factorsstrings_as_factors<-tdb_collecttdb_filtertdb_selecttiletile_ordertiledb_arraytiledb_array_apply_aggregatetiledb_array_closetiledb_array_createtiledb_array_delete_fragmentstiledb_array_delete_fragments_listtiledb_array_get_non_empty_domain_from_indextiledb_array_get_non_empty_domain_from_nametiledb_array_has_enumerationtiledb_array_is_heterogeneoustiledb_array_is_homogeneoustiledb_array_is_opentiledb_array_opentiledb_array_open_attiledb_array_schematiledb_array_schema_checktiledb_array_schema_evolutiontiledb_array_schema_evolution_add_attributetiledb_array_schema_evolution_add_enumerationtiledb_array_schema_evolution_add_enumeration_emptytiledb_array_schema_evolution_array_evolvetiledb_array_schema_evolution_drop_attributetiledb_array_schema_evolution_drop_enumerationtiledb_array_schema_evolution_expand_current_domaintiledb_array_schema_evolution_extend_enumerationtiledb_array_schema_get_allows_dupstiledb_array_schema_get_capacitytiledb_array_schema_get_current_domaintiledb_array_schema_set_allows_dupstiledb_array_schema_set_capacitytiledb_array_schema_set_coords_filter_listtiledb_array_schema_set_current_domaintiledb_array_schema_set_enumeration_emptytiledb_array_schema_set_offsets_filter_listtiledb_array_schema_set_validity_filter_listtiledb_array_schema_versiontiledb_array_upgrade_versiontiledb_arrow_array_deltiledb_arrow_array_ptrtiledb_arrow_schema_deltiledb_arrow_schema_ptrtiledb_attrtiledb_attribute_get_cell_sizetiledb_attribute_get_cell_val_numtiledb_attribute_get_enumerationtiledb_attribute_get_enumeration_ptrtiledb_attribute_get_fill_valuetiledb_attribute_get_nullabletiledb_attribute_has_enumerationtiledb_attribute_is_ordered_enumeration_ptrtiledb_attribute_is_variable_sizedtiledb_attribute_set_cell_val_numtiledb_attribute_set_enumeration_nametiledb_attribute_set_fill_valuetiledb_attribute_set_nullabletiledb_configtiledb_config_as_built_jsontiledb_config_as_built_showtiledb_config_loadtiledb_config_savetiledb_config_unsettiledb_ctxtiledb_ctx_set_tagtiledb_ctx_statstiledb_current_domaintiledb_current_domain_get_ndrectangletiledb_current_domain_get_typetiledb_current_domain_is_emptytiledb_current_domain_set_ndrectangletiledb_datatype_R_typetiledb_delete_metadatatiledb_densetiledb_dimtiledb_dim_get_cell_val_numtiledb_domaintiledb_domain_get_dimension_from_indextiledb_domain_get_dimension_from_nametiledb_domain_has_dimensiontiledb_error_messagetiledb_filestore_buffer_exporttiledb_filestore_buffer_importtiledb_filestore_schema_createtiledb_filestore_sizetiledb_filestore_uri_exporttiledb_filestore_uri_importtiledb_filtertiledb_filter_get_optiontiledb_filter_listtiledb_filter_list_get_max_chunk_sizetiledb_filter_list_set_max_chunk_sizetiledb_filter_set_optiontiledb_filter_typetiledb_fragment_infotiledb_fragment_info_densetiledb_fragment_info_dumptiledb_fragment_info_get_cell_numtiledb_fragment_info_get_non_empty_domain_indextiledb_fragment_info_get_non_empty_domain_nametiledb_fragment_info_get_non_empty_domain_var_indextiledb_fragment_info_get_non_empty_domain_var_nametiledb_fragment_info_get_numtiledb_fragment_info_get_sizetiledb_fragment_info_get_timestamp_rangetiledb_fragment_info_get_to_vacuum_numtiledb_fragment_info_get_to_vacuum_uritiledb_fragment_info_get_unconsolidated_metadata_numtiledb_fragment_info_get_versiontiledb_fragment_info_has_consolidated_metadatatiledb_fragment_info_sparsetiledb_fragment_info_uritiledb_get_all_metadatatiledb_get_contexttiledb_get_metadatatiledb_get_query_statustiledb_get_vfstiledb_grouptiledb_group_add_membertiledb_group_closetiledb_group_createtiledb_group_deletetiledb_group_delete_metadatatiledb_group_get_all_metadatatiledb_group_get_configtiledb_group_get_metadatatiledb_group_get_metadata_from_indextiledb_group_has_metadatatiledb_group_is_opentiledb_group_is_relativetiledb_group_membertiledb_group_member_counttiledb_group_member_dumptiledb_group_metadata_numtiledb_group_opentiledb_group_put_metadatatiledb_group_query_typetiledb_group_remove_membertiledb_group_set_configtiledb_group_uritiledb_has_metadatatiledb_is_supported_fstiledb_ndimtiledb_ndrectangletiledb_ndrectangle_datatypetiledb_ndrectangle_datatype_by_indtiledb_ndrectangle_dim_numtiledb_ndrectangle_get_rangetiledb_ndrectangle_set_rangetiledb_num_metadatatiledb_object_lstiledb_object_mvtiledb_object_rmtiledb_object_typetiledb_object_walktiledb_put_metadatatiledb_querytiledb_query_add_rangetiledb_query_add_range_with_typetiledb_query_alloc_buffer_ptr_chartiledb_query_apply_aggregatetiledb_query_buffer_alloc_ptrtiledb_query_conditiontiledb_query_condition_combinetiledb_query_condition_createtiledb_query_condition_inittiledb_query_condition_set_use_enumerationtiledb_query_create_buffer_ptrtiledb_query_create_buffer_ptr_chartiledb_query_ctxtiledb_query_export_buffertiledb_query_finalizetiledb_query_get_buffer_chartiledb_query_get_buffer_ptrtiledb_query_get_est_result_sizetiledb_query_get_est_result_size_vartiledb_query_get_fragment_numtiledb_query_get_fragment_timestamp_rangetiledb_query_get_fragment_uritiledb_query_get_layouttiledb_query_get_rangetiledb_query_get_range_numtiledb_query_get_range_vartiledb_query_import_buffertiledb_query_result_buffer_elementstiledb_query_result_buffer_elements_vectiledb_query_set_buffertiledb_query_set_buffer_ptrtiledb_query_set_buffer_ptr_chartiledb_query_set_conditiontiledb_query_set_layouttiledb_query_set_subarraytiledb_query_statstiledb_query_statustiledb_query_submittiledb_query_submit_asynctiledb_query_typetiledb_schema_get_namestiledb_schema_get_typestiledb_set_contexttiledb_set_vfstiledb_sparsetiledb_stats_disabletiledb_stats_dumptiledb_stats_enabletiledb_stats_printtiledb_stats_raw_dumptiledb_stats_raw_gettiledb_stats_raw_printtiledb_stats_resettiledb_subarraytiledb_subarray_to_querytiledb_versiontiledb_vfstiledb_vfs_closetiledb_vfs_copy_filetiledb_vfs_create_buckettiledb_vfs_create_dirtiledb_vfs_dir_sizetiledb_vfs_empty_buckettiledb_vfs_file_sizetiledb_vfs_is_buckettiledb_vfs_is_dirtiledb_vfs_is_empty_buckettiledb_vfs_is_filetiledb_vfs_lstiledb_vfs_ls_recursivetiledb_vfs_move_dirtiledb_vfs_move_filetiledb_vfs_opentiledb_vfs_readtiledb_vfs_remove_buckettiledb_vfs_remove_dirtiledb_vfs_remove_filetiledb_vfs_serializetiledb_vfs_synctiledb_vfs_touchtiledb_vfs_unserializetiledb_vfs_writetoMatrixtoSparseMatrixvfs_file

Dependencies:bitbit64latticenanoarrownanotimeRcppRcppCCTZRcppDateRcppInt64RcppSpdlogspdlzoo

Data Ingestion from SQL

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Last update: 2022-03-28
Started: 2022-01-26

Installation Options

Rendered frominstallation-options.mdusingsimplermarkdown::mdweave_to_htmlon Oct 08 2024.

Last update: 2022-01-26
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Introduction to TileDB

Rendered fromintroduction.mdusingsimplermarkdown::mdweave_to_htmlon Oct 08 2024.

Last update: 2024-10-03
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TileDB API Documentation

Rendered fromdocumentation.mdusingsimplermarkdown::mdweave_to_htmlon Oct 08 2024.

Last update: 2023-07-11
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TileDB RMariaDB Examples

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Readme and manuals

Help Manual

Help pageTopics
Returns a TileDB array, allowing for specific subset ranges.[,tiledb_array [,tiledb_array,ANY,ANY,tiledb_array-method [,tiledb_array,ANY,tiledb_array-method [,tiledb_array,ANY-method [,tiledb_array-method
Gets a config parameter value[,tiledb_config [,tiledb_config,ANY,ANY,tiledb_config-method [,tiledb_config,ANY,tiledb_config-method [,tiledb_config,ANY-method [,tiledb_config-method
Returns the filter at given index[,tiledb_filter_list [,tiledb_filter_list,ANY,ANY,tiledb_filter_list-method [,tiledb_filter_list,ANY,tiledb_filter_list-method [,tiledb_filter_list,ANY-method [,tiledb_filter_list-method
Sets a tiledb array value or value range[<-,tiledb_array [<-,tiledb_array,ANY,ANY,ANY-method [<-,tiledb_array,ANY,ANY,tiledb_array-method [<-,tiledb_array,ANY,tiledb_array-method [<-,tiledb_array-method
Sets a config parameter value[<-,tiledb_config [<-,tiledb_config,ANY,ANY,ANY-method [<-,tiledb_config,ANY,ANY,tiledb_config-method [<-,tiledb_config,ANY,tiledb_config-method [<-,tiledb_config-method
Returns logical value whether the array schema allows duplicate values or not. This is only valid for sparse arrays.allows_dups allows_dups,tiledb_array_schema-method tiledb_array_schema_get_allows_dups
Sets toggle whether the array schema allows duplicate values or not. This is only valid for sparse arrays.allows_dups<- allows_dups<-,tiledb_array_schema-method tiledb_array_schema_set_allows_dups
Consolidate fragments of a TileDB Arrayarray_consolidate
After consolidation, remove consolidated fragments of a TileDB Arrayarray_vacuum
Convert a 'tiledb_config' object to a R data.frameas.data.frame.tiledb_config
Convert a 'tiledb_config' object to a R vectoras.vector.tiledb_config
Returns a list of all 'tiledb_attr' objects associated with the 'tiledb_array_schema'attrs,tiledb_array_schema,ANY-method
Returns a 'tiledb_attr' object associated with the 'tiledb_array_schema' with a given name.attrs,tiledb_array_schema,character-method
Returns a 'tiledb_attr' object associated with the 'tiledb_array_schema' with a given indexattrs,tiledb_array_schema,numeric-method
Retrieve attributes from 'tiledb_array' objectattrs,tiledb_array,ANY-method
Selects attributes for the given TileDB arrayattrs<-,tiledb_array-method
Retrieve schema capacity (for sparse fragments)capacity capacity,tiledb_array_schema-method tiledb_array_schema_get_capacity
Sets the schema capacity (for sparse fragments)capacity<- capacity<-,tiledb_array_schema-method tiledb_array_schema_set_capacity
Returns the cell layout string associated with the 'tiledb_array_schema'cell_order,tiledb_array_schema-method
Return the number of scalar values per attribute cellcell_val_num cell_val_num,tiledb_attr-method tiledb_attribute_get_cell_val_num
Return the number of scalar values per dimension cellcell_val_num,tiledb_dim-method tiledb_dim_get_cell_val_num
Set the number of scalar values per attribute cellcell_val_num<- cell_val_num<-,tiledb_attr-method tiledb_attribute_set_cell_val_num
Check 'batched' query for completioncompletedBatched
Retrieve the 'tiledb_config' object from the 'tiledb_ctx'config,tiledb_ctx-method
Create a 'batched' query objectcreateBatched
Return the 'tiledb_attr' datatypedatatype,tiledb_attr-method
Return the 'tiledb_dim' datatypedatatype,tiledb_dim-method
Returns the tiledb_domain TileDB type stringdatatype,tiledb_domain-method
Retrieve datetimes_as_int64 toggledatetimes_as_int64 datetimes_as_int64,tiledb_array-method
Set datetimes_as_int64 toggledatetimes_as_int64<- datetimes_as_int64<-,tiledb_array-method
Describe a TileDB array schema via code to create itdescribe
Retrieve the dimension (domain extent) of the domaindim.tiledb_array_schema
Retrieves the dimension of the tiledb_dim domaindim.tiledb_dim
Retrieve the dimension (domain extent) of the domaindim.tiledb_domain
Returns a list of 'tiledb_dim' objects associated with the 'tiledb_array_schema'dimensions,tiledb_array_schema-method
Returns a list of the tiledb_domain dimension objectsdimensions,tiledb_domain-method
Returns the 'tiledb_domain' object associated with a given 'tiledb_array_schema'domain,tiledb_array_schema-method
Return the 'tiledb_dim' domaindomain,tiledb_dim-method
Retrieve data.frame extended returns columns toggleextended extended,tiledb_array-method
Set data.frame extended return columns toggleextended<- extended<-,tiledb_array-method
Run a 'batched' queryfetchBatched
Returns the offsets and coordinate filter_lists associated with the 'tiledb_array_schema'filter_list,tiledb_array_schema-method
Returns the TileDB Filter List object associated with the given TileDB Attributefilter_list,tiledb_attr-method
Returns the TileDB Filter List object associated with the given TileDB Dimensionfilter_list,tiledb_dim-method
Sets the TileDB Filter List for the TileDB Attribute objectfilter_list<-,tiledb_attr-method
Sets the TileDB Filter List for the TileDB Dimension objectfilter_list<-,tiledb_dim-method
Create a TileDB dense or sparse array from a given 'data.frame' ObjectfromDataFrame
Create a TileDB array from an R matrix, or return an R matrixfromMatrix toMatrix
Create (or return) a TileDB sparse arrayfromSparseMatrix toSparseMatrix
Generic Methodsattrs attrs<- cell_order config datatype dimensions domain filter_list filter_list<- generics is.integral is.sparse name nfilters raw_dump return.data.frame return.data.frame<- schema tdb_collect tdb_filter tdb_select tile tiledb_ndim tile_order
Check a schema for a given attribute namehas_attribute
Returns TRUE if the tiledb_dim is anonymousis.anonymous is.anonymous.tiledb_attr
Returns TRUE if the tiledb_dim is anonymousis.anonymous.tiledb_dim
Returns TRUE is tiledb_domain is an integral (integer) domainis.integral,tiledb_domain-method
Returns TRUE if the tiledb_array_schema is sparse, else FALSEis.sparse,tiledb_array_schema-method
Limit TileDB core use to a given number of coreslimitTileDBCores
Returns the filter_list's max_chunk_sizemax_chunk_size max_chunk_size,tiledb_filter_list-method tiledb_filter_list_get_max_chunk_size
Return the 'tiledb_attr' namename,tiledb_attr-method
Return the 'tiledb_dim' namename,tiledb_dim-method
Returns the filter_list's number of filtersnfilters,tiledb_filter_list-method
Create a 'tiledb_query_condition' object from an expressionparse_query_condition
Print a TileDB Array Metadata objectprint.tiledb_metadata
Retrieve query_condition value for the arrayquery_condition query_condition,tiledb_array-method
Set query_condition object for the arrayquery_condition<- query_condition<-,tiledb_array-method
Retrieve query_layout values for the arrayquery_layout query_layout,tiledb_array-method
Set query_layout return values for the arrayquery_layout<- query_layout<-,tiledb_array-method
Retrieve query_statistics togglequery_statistics query_statistics,tiledb_array-method
Set query_statistics togglequery_statistics<- query_statistics<-,tiledb_array-method
Look up TileDB type corresponding to the type of an R objectr_to_tiledb_type
Raw display of an array schema objectraw_dump,tiledb_array_schema-method
Raw display of an attribute objectraw_dump,tiledb_attr-method
Raw display of a domain objectraw_dump,tiledb_domain-method
Retrieve return_as conversion preferencereturn_as return_as,tiledb_array-method
Retrieve return_as conversion preferencereturn_as<- return_as<-,tiledb_array-method
Retrieve array return togglereturn.array return.array,tiledb_array-method
Set array return togglereturn.array<- return.array<-,tiledb_array-method
Retrieve data.frame return togglereturn.data.frame,tiledb_array-method
Set data.frame return togglereturn.data.frame<-,tiledb_array-method
Retrieve matrix return togglereturn.matrix return.matrix,tiledb_array-method
Set matrix return togglereturn.matrix<- return.matrix<-,tiledb_array-method
Store allocation size preferenceget_allocation_size_preference load_allocation_size_preference save_allocation_size_preference set_allocation_size_preference
Store object conversion preferenceget_return_as_preference load_return_as_preference save_return_as_preference set_return_as_preference
Check the schema for correctnesscheck check,tiledb_array_schema-method schema_check schema_check,tiledb_array_schema-method tiledb_array_schema_check
Return a schema from a URI character valueschema,character-method
Return a schema from a tiledb_array objectschema,tiledb_array-method
Retrieve selected_points values for the arrayselected_points selected_points,tiledb_array-method
Set selected_points return values for the arrayselected_points<- selected_points<-,tiledb_array-method
Retrieve selected_ranges values for the arrayselected_ranges selected_ranges,tiledb_array-method
Set selected_ranges return values for the arrayselected_ranges<- selected_ranges<-,tiledb_array-method
Set the filter_list's max_chunk_sizeset_max_chunk_size set_max_chunk_size,tiledb_filter_list,numeric-method tiledb_filter_list_set_max_chunk_size
Prints an array schema objectshow,tiledb_array_schema-method
Prints a tiledb_array objectshow,tiledb_array-method
Prints an attribute objectshow,tiledb_attr-method
Prints the config object to STDOUTshow,tiledb_config-method
Prints a dimension objectshow,tiledb_dim-method
Prints a domain objectshow,tiledb_domain-method
Prints a filter_list objectshow,tiledb_filter_list-method
Prints a filter objectshow,tiledb_filter-method
Display the TileDB Group object to STDOUTshow,tiledb_group-method
Return 'batched' statusstatusBatched
Retrieve strings_as_factors conversion togglestrings_as_factors strings_as_factors,tiledb_array-method
Set strings_as_factors return togglestrings_as_factors<- strings_as_factors<-,tiledb_array-method
Collect the query results to finalize piped expressiontdb_collect,tiledb_array-method
Filter from array for query via logical conditionstdb_filter,tiledb_array-method
Select attributes from array for querytdb_select,tiledb_array-method
Returns the tile layout string associated with the 'tiledb_array_schema'tile_order,tiledb_array_schema-method
Return the 'tiledb_dim' tile extenttile,tiledb_dim-method
Constructs a tiledb_array object backed by a persisted tiledb array uritiledb_array tiledb_dense tiledb_sparse
Run an aggregate query on the given (sparse) array and attributetiledb_array_apply_aggregate
Close a TileDB Arraytiledb_array_close
Creates a new TileDB array given an input schema.tiledb_array_create
Delete fragments written between the start and end times giventiledb_array_delete_fragments
Delete fragments written given by their URIstiledb_array_delete_fragments_list
Get the non-empty domain from a TileDB Array by indextiledb_array_get_non_empty_domain_from_index
Get the non-empty domain from a TileDB Array by nametiledb_array_get_non_empty_domain_from_name
Check for Enumeration (aka Factor aka Dictionary)tiledb_array_has_enumeration
Check for Heterogeneous Domaintiledb_array_is_heterogeneous
Check for Homogeneous Domaintiledb_array_is_homogeneous
Test if TileDB Array is opentiledb_array_is_open
Open a TileDB Arraytiledb_array_open
Open a TileDB Array at Timestamptiledb_array_open_at
Constructs a 'tiledb_array_schema' objecttiledb_array_schema
Creates a 'tiledb_array_schema_evolution' objecttiledb_array_schema_evolution
Add an Attribute to a TileDB Array Schema Evolution objecttiledb_array_schema_evolution_add_attribute
Add an Enumeration to a TileDB Array Schema Evolution objecttiledb_array_schema_evolution_add_enumeration
Evolve an Array Schema by adding an empty Enumerationtiledb_array_schema_evolution_add_enumeration_empty
Evolve an Array Schematiledb_array_schema_evolution_array_evolve
Drop an attribute given by name from a TileDB Array Schema Evolution objecttiledb_array_schema_evolution_drop_attribute
Drop an Enumeration given by name from a TileDB Array Schema Evolution objecttiledb_array_schema_evolution_drop_enumeration
Expand an the Current Domain of an Array via Array Schema Evolutiontiledb_array_schema_evolution_expand_current_domain
Extend an Evolution via Array Schema Evolutiontiledb_array_schema_evolution_extend_enumeration
An S4 class for a TileDB ArraySchemaEvolution objecttiledb_array_schema_evolution-class
Get the Current Domain of an Array Schematiledb_array_schema_get_current_domain
Set a Filter List for Coordinate of a TileDB Schematiledb_array_schema_set_coords_filter_list
Set a Current Domain of an Array Schematiledb_array_schema_set_current_domain
Add an empty Enumeration to a Schematiledb_array_schema_set_enumeration_empty
Set a Filter List for Variable-Sized Offsets of a TileDB Schematiledb_array_schema_set_offsets_filter_list
Set a Filter List for Validity of a TileDB Schematiledb_array_schema_set_validity_filter_list
Check the version of the array schematiledb_array_schema_version
An S4 class for the TileDB array schematiledb_array_schema-class
Upgrade an Array to the current TileDB Array Schema Formattiledb_array_upgrade_version
An S4 class for a TileDB Arraytiledb_array-class
(Deprecated) Allocate (or Release) Arrow Array and Schema Pointerstiledb_arrow_array_del tiledb_arrow_array_ptr tiledb_arrow_schema_del tiledb_arrow_schema_ptr
Constructs a 'tiledb_attr' objecttiledb_attr
An S4 class for a TileDB attributetiledb_attr-class
Get the TileDB Attribute cell sizetiledb_attribute_get_cell_size
Get the TileDB Attribute Enumerationtiledb_attribute_get_enumeration tiledb_attribute_get_enumeration_ptr
Get the fill value for a TileDB Attributetiledb_attribute_get_fill_value
Get the TileDB Attribute Nullable flag valuetiledb_attribute_get_nullable
Test if TileDB Attribute has an Enumerationtiledb_attribute_has_enumeration
Check if TileDB Attribute Enumeration is Orderedtiledb_attribute_is_ordered_enumeration_ptr
Check whether TileDB Attribute is variable-sizedtiledb_attribute_is_variable_sized
Set a TileDB Attribute Enumeration Nametiledb_attribute_set_enumeration_name
Set the fill value for a TileDB Attributetiledb_attribute_set_fill_value
Set the TileDB Attribute Nullable flagstiledb_attribute_set_nullable
Creates a 'tiledb_config' objecttiledb_config
Return the 'AsBuilt' JSON stringtiledb_config_as_built_json
Display the 'AsBuilt' JSON stringtiledb_config_as_built_show
Load a saved 'tiledb_config' file from disktiledb_config_load
Save a 'tiledb_config' object ot a local text filetiledb_config_save
Unset a TileDB Config parameter to its default valuetiledb_config_unset
An S4 class for a TileDB configurationtiledb_config-class
Creates a 'tiledb_ctx' objecttiledb_ctx
Sets default context tagstiledb_ctx_set_default_tags
Sets a string:string "tag" on the Ctxtiledb_ctx_set_tag
Return context statistics as a JSON stringtiledb_ctx_stats
An S4 class for a TileDB contexttiledb_ctx-class
Creates a 'tiledb_current_domain' objecttiledb_current_domain
Get a 'tiledb_ndrectangle' from a 'tiledb_current_domain' objecttiledb_current_domain_get_ndrectangle
Get 'tiledb_current_domain' data type as stringtiledb_current_domain_get_type
Test 'tiledb_current_domain' object for being emptytiledb_current_domain_is_empty
Set a 'tiledb_ndrectangle' in a 'tiledb_current_domain' objecttiledb_current_domain_set_ndrectangle
An S4 class for a TileDB CurrentDomain objecttiledb_current_domain-class
Map from TileDB type to R datatypetiledb_datatype_R_type
Delete a TileDB Array Metadata object given by keytiledb_delete_metadata
Constructs a 'tiledb_dim' objecttiledb_dim
An S4 class for a TileDB dimension objecttiledb_dim-class
Constructs a 'tiledb_domain' objecttiledb_domain
Returns a Dimension indicated by index for the given TileDB Domaintiledb_domain_get_dimension_from_index
Returns a Dimension indicated by name for the given TileDB Domaintiledb_domain_get_dimension_from_name
Check a domain for a given dimension nametiledb_domain_has_dimension
An S4 class for a TileDB domaintiledb_domain-class
Return the error message for a given contexttiledb_error_message
Export from a TileDB Filestore to a character variabletiledb_filestore_buffer_export
Import size bytes from a string into a TileDB Filestoretiledb_filestore_buffer_import
Create an array schema from a given URI with schematiledb_filestore_schema_create
Return (uncompressed) TileDB Filestore sizetiledb_filestore_size
Export a file from a TileDB Filestoretiledb_filestore_uri_export
Import a file into a TileDB Filestoretiledb_filestore_uri_import
Constructs a 'tiledb_filter' objecttiledb_filter
Returns the filter's optiontiledb_filter_get_option
Constructs a 'tiledb_filter_list' objecttiledb_filter_list
An S4 class for a TileDB filter listtiledb_filter_list-class
Set the option for a filtertiledb_filter_set_option
Returns the type of the filter usedtiledb_filter_type
An S4 class for a TileDB filtertiledb_filter-class
Constructs a 'tiledb_fragment_info' objecttiledb_fragment_info
Return if a fragment info index is densetiledb_fragment_info_dense
Dump the fragment info to consoletiledb_fragment_info_dump
Return a fragment info number of cells for a given fragment indextiledb_fragment_info_get_cell_num
Return a fragment info non-empty domain from indextiledb_fragment_info_get_non_empty_domain_index
Return a fragment info non-empty domain from nametiledb_fragment_info_get_non_empty_domain_name
Return a fragment info non-empty domain variable from indextiledb_fragment_info_get_non_empty_domain_var_index
Return a fragment info non-empty domain variable from nametiledb_fragment_info_get_non_empty_domain_var_name
Return a fragment info number of fragmentstiledb_fragment_info_get_num
Return a fragment info fragment size for a given fragment indextiledb_fragment_info_get_size
Return a fragment info timestamp range for a given fragment indextiledb_fragment_info_get_timestamp_range
Return the number of fragment info elements to be vacuumedtiledb_fragment_info_get_to_vacuum_num
Return fragment info URI of the to be vacuumed indextiledb_fragment_info_get_to_vacuum_uri
Return fragment info number of unconsolidated metadatatiledb_fragment_info_get_unconsolidated_metadata_num
Return a fragment info version for a given fragment indextiledb_fragment_info_get_version
Return if a fragment info index has consolidated metadatatiledb_fragment_info_has_consolidated_metadata
Return if a fragment info index is sparsetiledb_fragment_info_sparse
Return a fragment info URI given its indextiledb_fragment_info_uri
An S4 class for a TileDB fragment info objecttiledb_fragment_info-class
Return all TileDB Array Metadata objects as a named listtiledb_get_all_metadata
Retrieve a TileDB context object from the package cachetiledb_get_context
Return a TileDB Array Metadata object given by keytiledb_get_metadata
Retrieve the cached status of the last finalized querytiledb_get_query_status
Retrieve a TileDB VFS object from the package environment and cachetiledb_get_vfs
Creates a 'tiledb_group' objecttiledb_group
Add Member to TileDB Grouptiledb_group_add_member
Close a TileDB Grouptiledb_group_close
Create a TileDB Group at the given pathtiledb_group_create
Deletes all written data from a 'tiledb_group' objecttiledb_group_delete
Deletes Metadata from a TileDB Grouptiledb_group_delete_metadata
Return all Metadata from a TileDB Grouptiledb_group_get_all_metadata
Get a TileDB Config from a TileDB Grouptiledb_group_get_config
Accesses Metadata from a TileDB Grouptiledb_group_get_metadata
Accesses Metadata by Index from a TileDB Grouptiledb_group_get_metadata_from_index
Checks for Metadata in a TileDB Grouptiledb_group_has_metadata
Test if TileDB Group is opentiledb_group_is_open
Test if a Named Group is Using a Relative URItiledb_group_is_relative
Get a Member (Description) by Index from TileDB Grouptiledb_group_member
Get Member Count from TileDB Grouptiledb_group_member_count
Dump the TileDB Group to Stringtiledb_group_member_dump
Returns Number of Metadata Objects a TileDB Grouptiledb_group_metadata_num
Open a TileDB Grouptiledb_group_open
Write Metadata to a TileDB Grouptiledb_group_put_metadata
Return a TileDB Group query typetiledb_group_query_type
Remove Member from TileDB Grouptiledb_group_remove_member
Set a TileDB Config for a TileDB Grouptiledb_group_set_config
Return a TileDB Group URItiledb_group_uri
An S4 class for a TileDB Group objecttiledb_group-class
Test if TileDB Array has Metadatatiledb_has_metadata
Query if a TileDB backend is supportedtiledb_is_supported_fs
Return the number of dimensions associated with the 'tiledb_array_schema'tiledb_ndim,tiledb_array_schema-method
Returns the number of dimensions for a tiledb domain objecttiledb_ndim,tiledb_dim-method
Returns the number of dimensions of the 'tiledb_domain'tiledb_ndim,tiledb_domain-method
Creates a 'tiledb_ndrectangle' objecttiledb_ndrectangle
Get the datatype of a named 'tiledb_ndrectangle' dimensiontiledb_ndrectangle_datatype
Get the datatype of a 'tiledb_ndrectangle' dimension by indextiledb_ndrectangle_datatype_by_ind
Get the number of dimensions for 'tiledb_ndrectangle' objecttiledb_ndrectangle_dim_num
Get a range from a 'tiledb_ndrectangle' objecttiledb_ndrectangle_get_range
Set a range on a 'tiledb_ndrectangle' objecttiledb_ndrectangle_set_range
An S4 class for a TileDB NDRectangle objecttiledb_ndrectangle-class
Return count of TileDB Array Metadata objectstiledb_num_metadata
List TileDB resources at a given root URI pathtiledb_object_ls
Move a TileDB resource to new uri pathtiledb_object_mv
Removes a TileDB resourcetiledb_object_rm
Return the TileDB object type string of a TileDB resourcetiledb_object_type
Recursively discover TileDB resources at a given root URI pathtiledb_object_walk
Store an object in TileDB Array Metadata under given keytiledb_put_metadata
Creates a 'tiledb_query' objecttiledb_query
Set a range for a given querytiledb_query_add_range
Set a range for a given query, also supplying typetiledb_query_add_range_with_type
Allocate a Query buffer for reading a character attributetiledb_query_alloc_buffer_ptr_char
Run an aggregate oprtation on the given query attributetiledb_query_apply_aggregate
Allocate a Query buffer for a given typetiledb_query_buffer_alloc_ptr
Creates a 'tiledb_query_condition' objecttiledb_query_condition
Combine two 'tiledb_query_condition' objectstiledb_query_condition_combine
Create a query condition for vector 'IN' and 'NOT_IN' operationstiledb_query_condition_create
Initialize a 'tiledb_query_condition' objecttiledb_query_condition_init
Enable use of enumeration in query conditiontiledb_query_condition_set_use_enumeration
An S4 class for a TileDB QueryCondition objecttiledb_query_condition-class
Allocate and populate a Query buffer for a given object of a given data type.tiledb_query_create_buffer_ptr
Allocate and populate a Query buffer for writing the given char vectortiledb_query_create_buffer_ptr_char
Return query context objecttiledb_query_ctx
Export Query Buffer to Pair of Arrow IO Pointerstiledb_query_export_buffer
Finalize TileDB Querytiledb_query_finalize
Retrieve content from a Query character buffertiledb_query_get_buffer_char
Retrieve content from a Query buffertiledb_query_get_buffer_ptr
Retrieve the estimated result size for a query and attributetiledb_query_get_est_result_size
Retrieve the estimated result size for a query and variable-sized attributetiledb_query_get_est_result_size_var
Retrieve the Number of Fragments for Querytiledb_query_get_fragment_num
Retrieve the timestamp range for a given Query Fragmenttiledb_query_get_fragment_timestamp_range
Retrieve the URI for a given Query Fragmenttiledb_query_get_fragment_uri
Get TileDB Query layouttiledb_query_get_layout
Retrieve the query range for a query dimension and range indextiledb_query_get_range
Retrieve the number of ranges for a query dimensiontiledb_query_get_range_num
Retrieve the query range for a variable-sized query dimension and range indextiledb_query_get_range_var
Import to Query Buffer from Pair of Arrow IO Pointerstiledb_query_import_buffer
Get TileDB Query result buffer element sizetiledb_query_result_buffer_elements
Get TileDB Query result buffer element size pair as vectortiledb_query_result_buffer_elements_vec
Set TileDB Query buffertiledb_query_set_buffer
Assigns to a Query buffer for a given attributetiledb_query_set_buffer_ptr
Assign a buffer to a Query attributetiledb_query_set_buffer_ptr_char
Set a query combination object for a querytiledb_query_set_condition
Set TileDB Query layouttiledb_query_set_layout
Set subarray for TileDB Query objecttiledb_query_set_subarray
Return query statistics as a JSON stringtiledb_query_stats
Get TileDB Query statustiledb_query_status
Submit TileDB Querytiledb_query_submit
Submit TileDB Query asynchronously without a callback returning immediatelytiledb_query_submit_async
Return TileDB Query typetiledb_query_type
An S4 class for a TileDB Query objecttiledb_query-class
Get Dimension or Attribute Statustiledb_schema_get_dim_attr_status
Get Dimension or Attribute Statustiledb_schema_get_enumeration_status
Get all Dimension and Attribute Namestiledb_schema_get_names
Get all Dimension and Attribute Typestiledb_schema_get_types
Succinctly describe a TileDB array schematiledb_schema_object
Store a TileDB context object in the package cachetiledb_set_context
Store a TileDB VFS object in the package environmenttiledb_set_vfs
Disable internal TileDB statistics counterstiledb_stats_disable
Dumps internal TileDB statistics to file or stdouttiledb_stats_dump
Enable internal TileDB statistics counterstiledb_stats_enable
Print internal TileDB statisticstiledb_stats_print
Dumps internal TileDB statistics as JSON to a stringtiledb_stats_raw_dump
Gets internal TileDB statistics as JSON stringtiledb_stats_raw_get
Print internal TileDB statistics as JSONtiledb_stats_raw_print
Reset internal TileDB statistics counterstiledb_stats_reset
Constructs a 'tiledb_subarray' object from a TileDB Querytiledb_subarray
Apply a Subarray to a Querytiledb_subarray_to_query
An S4 class for a TileDB Subarraytiledb_subarray-class
The version of the libtiledb librarytiledb_version
Creates a 'tiledb_vfs' objecttiledb_vfs
Close a TileDB VFS Filehandletiledb_vfs_close
Copy a file to VFStiledb_vfs_copy_file
Create a VFS Buckettiledb_vfs_create_bucket
Create a VFS Directorytiledb_vfs_create_dir
Return VFS Directory Sizetiledb_vfs_dir_size
Empty a VFS Buckettiledb_vfs_empty_bucket
Return VFS File Sizetiledb_vfs_file_size
Check for VFS Buckettiledb_vfs_is_bucket
Test for VFS Directorytiledb_vfs_is_dir
Check for empty VFS Buckettiledb_vfs_is_empty_bucket
Test for VFS Filetiledb_vfs_is_file
Return VFS Directory Listingtiledb_vfs_ls
Recursively list objects from given URItiledb_vfs_ls_recursive
Move (or rename) a VFS Directorytiledb_vfs_move_dir
Move (or rename) a VFS Filetiledb_vfs_move_file
Open a TileDB VFS Filehandle for reading or writingtiledb_vfs_open
Read from a TileDB VFS Filehandletiledb_vfs_read
Remove a VFS Buckettiledb_vfs_remove_bucket
Remove a VFS Directorytiledb_vfs_remove_dir
Remove a VFS Filetiledb_vfs_remove_file
Serialize an R Object to a VFS-accessible URItiledb_vfs_serialize
Sync a TileDB VFS Filehandletiledb_vfs_sync
Touch a VFS URI Resourcetiledb_vfs_touch
Unserialize an R Object from a VFS-accessible URItiledb_vfs_unserialize
Write to a TileDB VFS Filehandletiledb_vfs_write
An S4 class for a TileDB VFS objecttiledb_vfs-class
Create a custom file connectionvfs_file