Package: tiledbsoma 1.14.2
tiledbsoma: 'TileDB' Stack of Matrices, Annotated ('SOMA')
Interface for working with 'TileDB'-based Stack of Matrices, Annotated ('SOMA'): an open data model for representing annotated matrices, like those commonly used for single cell data analysis. It is documented at <https://github.com/single-cell-data>; a formal specification available is at <https://github.com/single-cell-data/SOMA/blob/main/abstract_specification.md>.
Authors:
tiledbsoma_1.14.2.tar.gz
tiledbsoma_1.14.2.tgz(r-4.4-x86_64)tiledbsoma_1.14.2.tgz(r-4.4-arm64)tiledbsoma_1.14.2.tgz(r-4.3-x86_64)tiledbsoma_1.14.2.tgz(r-4.3-arm64)
tiledbsoma_1.14.2.tar.gz(r-4.5-noble)tiledbsoma_1.14.2.tar.gz(r-4.4-noble)
tiledbsoma.pdf |tiledbsoma.html✨
tiledbsoma/json (API)
NEWS
# Install 'tiledbsoma' in R: |
install.packages('tiledbsoma', repos = c('https://tiledb-inc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/single-cell-data/tiledb-soma/issues
Last updated 9 days agofrom:0e63ade59f (on 1.14.2). Checks:OK: 1 WARNING: 5. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 26 2024 |
R-4.5-linux-x86_64 | WARNING | Sep 26 2024 |
R-4.4-mac-x86_64 | WARNING | Sep 26 2024 |
R-4.4-mac-aarch64 | WARNING | Sep 26 2024 |
R-4.3-mac-x86_64 | WARNING | Sep 26 2024 |
R-4.3-mac-aarch64 | WARNING | Sep 26 2024 |
Exports:BlockwiseReadIterBaseBlockwiseSparseReadIterBlockwiseTableReadIterConfigListCoordsStriderdelete_metadataEphemeralCollectionEphemeralCollectionBaseEphemeralExperimentEphemeralMeasurementextract_datasetget_all_metadataget_metadataget_metadata_numhas_metadataIntIndexerlist_datasetsload_datasetMappingBasematrixZeroBasedViewPlatformConfigReadIterScalarMapset_log_levelset_metadatashow_package_versionssoma_contextSOMAAxisIndexerSOMAAxisQuerySOMAAxisQueryResultSOMACollectionSOMACollectionBaseSOMACollectionCreateSOMACollectionOpenSOMAContextBaseSOMADataFrameSOMADataFrameCreateSOMADataFrameOpenSOMADenseNDArraySOMADenseNDArrayCreateSOMADenseNDArrayOpenSOMAExperimentSOMAExperimentAxisQuerySOMAExperimentCreateSOMAExperimentOpenSOMAMeasurementSOMAMeasurementCreateSOMAMeasurementOpenSOMANDArrayBaseSOMAOpenSOMASparseNDArraySOMASparseNDArrayBlockwiseReadSOMASparseNDArrayCreateSOMASparseNDArrayOpenSOMASparseNDArrayReadSOMASparseNDArrayReadBaseSOMATileDBContextSparseReadIterTableReadIterTileDBArrayTileDBCreateOptionsTileDBGroupTileDBObjecttiledbsoma_stats_disabletiledbsoma_stats_dumptiledbsoma_stats_enabletiledbsoma_stats_resettiledbsoma_stats_showwrite_soma
Dependencies:arrowassertthatbitbit64clicpp11data.tablefansifsgluelatticelifecyclemagrittrMatrixnanoarrownanotimepillarpkgconfigpurrrR6RcppRcppCCTZRcppDateRcppInt64RcppSpdlogrlangspdltibbletidyselecttiledbtriebeardurltoolsutf8vctrswithrzoo
Querying a SOMA experiment
Rendered fromsoma-experiment-queries.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2024-06-05
Started: 2023-05-05
Reading from SOMA objects
Rendered fromsoma-reading.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2024-05-23
Started: 2023-05-05
SOMA objects overview
Rendered fromsoma-objects.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2024-05-23
Started: 2023-05-05
Using PlatformConfig
Rendered fromUsingPlatformConfig.Rmd
usingknitr::rmarkdown
on Sep 26 2024.Last update: 2023-04-10
Started: 2023-04-10